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arae

tensorflow implementation of Adversarially Regularized Autoencoders (ARAE)

arae-1

Code for the paper "Adversarially Regularized Autoencoders (ICML 2018)" by Zhao, Kim, Zhang, Rush and LeCun

awesome-public-datasets

A topic-centric list of HQ open datasets. PR ☛☛☛

caviar

cdmir

Causal Discovering, ModelIng and Reasoning

cevae

Causal Effect Inference with Deep Latent-Variable Models

cfrnet

Counterfactual Regression

clomat

CLoMAT: Conditional Logistic Model Association Tests. CLoMAT provides a general solution to control for population stratification by matching cases and controls based on their ancestry background.

dataset

Dataset for training

depict

DEPICT code, instructions and an example

dsn

Pytorch implementation of Domain Separation Networks

ensembl

The Ensembl Core Perl API and SQL schema

gemma

Genome-wide Efficient Mixed Model Association

hdl

High-definition likelihood inference of genetic correlations (HDL)

hess

Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.

medltmle

R/medltmle: Estimation and Inference for Natural Mediation Effect in Longitudinal Data

models

Models and examples built with TensorFlow

moss

(Model One-Step Survival): one-step TMLE for survival curve

npci

Non-parametrics for Causal Inference

polmm

Proportional Odds Logistic Mixed Model (POLMM) for ordinal categorical data analysis

popgen-notes

Population genetics notes

postgap

Linking GWAS studies to genes through cis-regulatory datasets

rtest

A test for R package

spacox

GWAS for survival analysis in large cohorts

spage

SaddlePoint Approximation implementation of GxE analysis

spatest

Score Test Based on Saddlepoint Approximation

tensorflow-course

Simple and ready-to-use tutorials for TensorFlow

tybalt

Training and evaluating a variational autoencoder for pan-cancer gene expression data

uk_biobank_gwas

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

ukbb_ldsc

Sample code for ldsc analyses in UKBB