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bioinformatics_teaching_bionetwork

cccbank

CCCbank: an integrated computational pipeline for CCC inference by flexibly combining inference methods and prior databases

drynetmc

Modeling and characterizing dynamic gene regulatory networks underlying cancer drug resistance based on time course RNA-seq data

endecon

Ensemble learning-based model for ST deconvolution - EnDecon

esiccc

ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods

glioma-macrophage-scmlnet

hexa-network

mcgn-ms

Multicellular gene network analysis identifies a macrophage-related gene signature predictive of therapeutic response and prognosis of gliomas

paper-covid19

pearlst

PearlST - Partial differential equation (PDE)-enhanced adversarial graph autoencoder to dissect spatial-temporal structures in ST data

pearlst-code

The source code of PearlST for reproducing analysis results in the paper

prob

pseudotemporal progression-based Bayesian method for inferring GRNs from cross-sectional clinical transcriptomic data

prob_r

R codes for PROB algorithm

scmlnet

Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

scmlnet2.0

scMLnet2.0: Single-cell RNA-seq data-based inference of multilayer inter- and intra-cellular signaling networks

st-deconvoulution

stmlnet

stMLnet: Dissecting spatial and multilayer cell-cell communications with stMLnet

stmlnet-analysiscode

stmlnet-simulation