Comments (3)
kevinkle
commented on June 12, 2024
would the full name being in `hit` and the shortname in `description` be the way to go?
chadlaing [11:18 AM]
to me, the longer of the two should be the description
from spfy.
kevinkle
commented on June 12, 2024
note: having different long and short names is prob an edge case. ex:
[
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1078 # 1156804 # 1158030 # -1 # ID=1_1078;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=5bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtG",
"hitorientation": "-",
"hitstart": 1156804,
"hitstop": 1158030,
"longname": "mdtG"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1090 # 1166658 # 1167866 # -1 # ID=1_1090;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=4bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtH",
"hitorientation": "-",
"hitstart": 1166658,
"hitstop": 1167866,
"longname": "mdtH"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1236 # 1319929 # 1320342 # -1 # ID=1_1236;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "H-NS",
"hitorientation": "-",
"hitstart": 1319929,
"hitstop": 1320342,
"longname": "H-NS"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1506 # 1622774 # 1623208 # 1 # ID=1_1506;partial=00;start_type=GTG;rbs_motif=AGG;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli marR mutant conferring antibiotic resistance",
"hitorientation": "+",
"hitstart": 1622774,
"hitstop": 1623208,
"longname": "Escherichia coli marR mutant conferring antibiotic resistance"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1507 # 1623228 # 1623611 # 1 # ID=1_1507;partial=00;start_type=ATG;rbs_motif=GAGG;rbs_spacer=7bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "marA",
"hitorientation": "+",
"hitstart": 1623228,
"hitstop": 1623611,
"longname": "marA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1756 # 1865670 # 1866083 # -1 # ID=1_1756;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=10bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "msrB",
"hitorientation": "-",
"hitstart": 1865670,
"hitstop": 1866083,
"longname": "msrB"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_1991 # 2101383 # 2102549 # -1 # ID=1_1991;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=8bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "PmrE",
"hitorientation": "-",
"hitstart": 2101383,
"hitstop": 2102549,
"longname": "PmrE"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2039 # 2156952 # 2158199 # 1 # ID=1_2039;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=12bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtA",
"hitorientation": "+",
"hitstart": 2156952,
"hitstop": 2158199,
"longname": "mdtA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2040 # 2158199 # 2161321 # 1 # ID=1_2040;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=10bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtB",
"hitorientation": "+",
"hitstart": 2158199,
"hitstop": 2161321,
"longname": "mdtB"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2041 # 2161322 # 2164399 # 1 # ID=1_2041;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=6bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtC",
"hitorientation": "+",
"hitstart": 2161322,
"hitstop": 2164399,
"longname": "mdtC"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2043 # 2165812 # 2167215 # 1 # ID=1_2043;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=6bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "baeS",
"hitorientation": "+",
"hitstart": 2165812,
"hitstop": 2167215,
"longname": "baeS"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2044 # 2167212 # 2167934 # 1 # ID=1_2044;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=6bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "baeR",
"hitorientation": "+",
"hitstart": 2167212,
"hitstop": 2167934,
"longname": "baeR"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2174 # 2309848 # 2311491 # -1 # ID=1_2174;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "YojI",
"hitorientation": "-",
"hitstart": 2309848,
"hitstop": 2311491,
"longname": "YojI"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2218 # 2369947 # 2370915 # 1 # ID=1_2218;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "PmrF",
"hitorientation": "+",
"hitstart": 2369947,
"hitstop": 2370915,
"longname": "PmrF"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2219 # 2370915 # 2372897 # 1 # ID=1_2219;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "arnA",
"hitorientation": "+",
"hitstart": 2370915,
"hitstop": 2372897,
"longname": "arnA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2332 # 2483514 # 2485052 # -1 # ID=1_2332;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=8bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 99.8,
"hitname": "emrY",
"hitorientation": "-",
"hitstart": 2483514,
"hitstop": 2485052,
"longname": "emrY"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2333 # 2485052 # 2486215 # -1 # ID=1_2333;partial=00;start_type=GTG;rbs_motif=GAG;rbs_spacer=8bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "emrK",
"hitorientation": "-",
"hitstart": 2485052,
"hitstop": 2486215,
"longname": "emrK"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2334 # 2486631 # 2487245 # 1 # ID=1_2334;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=7bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "evgA",
"hitorientation": "+",
"hitstart": 2486631,
"hitstop": 2487245,
"longname": "evgA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2335 # 2487250 # 2490843 # 1 # ID=1_2335;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "evgS",
"hitorientation": "+",
"hitstart": 2487250,
"hitstop": 2490843,
"longname": "evgS"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2421 # 2583771 # 2586884 # 1 # ID=1_2421;partial=00;start_type=ATG;rbs_motif=GAGG;rbs_spacer=10bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "acrD",
"hitorientation": "+",
"hitstart": 2583771,
"hitstop": 2586884,
"longname": "acrD"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2627 # 2807074 # 2807604 # 1 # ID=1_2627;partial=00;start_type=ATG;rbs_motif=GAGG;rbs_spacer=10bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "emrR",
"hitorientation": "+",
"hitstart": 2807074,
"hitstop": 2807604,
"longname": "emrR"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2628 # 2807731 # 2808903 # 1 # ID=1_2628;partial=00;start_type=ATG;rbs_motif=GGAG;rbs_spacer=6bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "emrA",
"hitorientation": "+",
"hitstart": 2807731,
"hitstop": 2808903,
"longname": "emrA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2629 # 2808920 # 2810458 # 1 # ID=1_2629;partial=00;start_type=ATG;rbs_motif=GAGG;rbs_spacer=8bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "emrB",
"hitorientation": "+",
"hitstart": 2808920,
"hitstop": 2810458,
"longname": "emrB"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2966 # 3174628 # 3176109 # 1 # ID=1_2966;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=6bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "TolC",
"hitorientation": "+",
"hitstart": 3174628,
"hitstop": 3176109,
"longname": "TolC"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_2988 # 3199823 # 3200644 # -1 # ID=1_2988;partial=00;start_type=ATG;rbs_motif=AGG;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "bacA",
"hitorientation": "-",
"hitstart": 3199823,
"hitstop": 3200644,
"longname": "bacA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3004 # 3215895 # 3217385 # 1 # ID=1_3004;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 99.78,
"hitname": "patA",
"hitorientation": "+",
"hitstart": 3215895,
"hitstop": 3217385,
"longname": "patA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3187 # 3409315 # 3409977 # -1 # ID=1_3187;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "AcrS",
"hitorientation": "-",
"hitstart": 3409315,
"hitstop": 3409977,
"longname": "AcrS"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3188 # 3410376 # 3411533 # 1 # ID=1_3188;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=6bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "AcrE",
"hitorientation": "+",
"hitstart": 3410376,
"hitstop": 3411533,
"longname": "AcrE"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3189 # 3411545 # 3414649 # 1 # ID=1_3189;partial=00;start_type=ATG;rbs_motif=AGG;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "AcrF",
"hitorientation": "+",
"hitstart": 3411545,
"hitstop": 3414649,
"longname": "AcrF"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3278 # 3482632 # 3483264 # 1 # ID=1_3278;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 98.57,
"hitname": "CRP",
"hitorientation": "+",
"hitstart": 3482632,
"hitstop": 3483264,
"longname": "CRP"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3434 # 3655745 # 3656902 # 1 # ID=1_3434;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=5bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtE",
"hitorientation": "+",
"hitstart": 3655745,
"hitstop": 3656902,
"longname": "mdtE"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3435 # 3656927 # 3660040 # 1 # ID=1_3435;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=5bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtF",
"hitorientation": "+",
"hitstart": 3656927,
"hitstop": 3660040,
"longname": "mdtF"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3436 # 3660403 # 3661131 # -1 # ID=1_3436;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=5bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 94.63,
"hitname": "gadW",
"hitorientation": "-",
"hitstart": 3660403,
"hitstop": 3661131,
"longname": "gadW"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3437 # 3661499 # 3662323 # -1 # ID=1_3437;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "gadX",
"hitorientation": "-",
"hitstart": 3661499,
"hitstop": 3662323,
"longname": "gadX"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3600 # 3850434 # 3851618 # 1 # ID=1_3600;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 99.49,
"hitname": "emrD",
"hitorientation": "+",
"hitstart": 3850434,
"hitstop": 3851618,
"longname": "emrD"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3825 # 4100075 # 4101448 # -1 # ID=1_3825;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "cpxA",
"hitorientation": "-",
"hitstart": 4100075,
"hitstop": 4101448,
"longname": "cpxA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3972 # 4273533 # 4273856 # -1 # ID=1_3972;partial=00;start_type=ATG;rbs_motif=GAGG;rbs_spacer=7bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli soxS with mutation conferring antibiotic resistance",
"hitorientation": "-",
"hitstart": 4273533,
"hitstop": 4273856,
"longname": "Escherichia coli soxS with mutation conferring antibiotic resistance"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3973 # 4273942 # 4274406 # 1 # ID=1_3973;partial=00;start_type=ATG;rbs_motif=AGG;rbs_spacer=11bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli soxR with mutation conferring antibiotic resistance",
"hitorientation": "+",
"hitstart": 4273942,
"hitstop": 4274406,
"longname": "Escherichia coli soxR with mutation conferring antibiotic resistance"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3991 # 4296037 # 4297503 # -1 # ID=1_3991;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=7bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtP",
"hitorientation": "-",
"hitstart": 4296037,
"hitstop": 4297503,
"longname": "mdtP"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3992 # 4297500 # 4299551 # -1 # ID=1_3992;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=8bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtO",
"hitorientation": "-",
"hitstart": 4297500,
"hitstop": 4299551,
"longname": "mdtO"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_3993 # 4299551 # 4300582 # -1 # ID=1_3993;partial=00;start_type=ATG;rbs_motif=GAG;rbs_spacer=8bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtN",
"hitorientation": "-",
"hitstart": 4299551,
"hitstop": 4300582,
"longname": "mdtN"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_4026 # 4330420 # 4332063 # -1 # ID=1_4026;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "PmrC",
"hitorientation": "-",
"hitstart": 4330420,
"hitstop": 4332063,
"longname": "PmrC"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_4063 # 4374285 # 4375418 # -1 # ID=1_4063;partial=00;start_type=ATG;rbs_motif=GGA;rbs_spacer=11bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli ampC beta-lactamase",
"hitorientation": "-",
"hitstart": 4374285,
"hitstop": 4375418,
"longname": "Escherichia coli ampC beta-lactamase"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_4248 # 4563761 # 4564993 # -1 # ID=1_4248;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=9bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "mdtM",
"hitorientation": "-",
"hitstart": 4563761,
"hitstop": 4564993,
"longname": "mdtM"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_449 # 480553 # 483702 # -1 # ID=1_449;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=10bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "acrB",
"hitorientation": "-",
"hitstart": 480553,
"hitstop": 483702,
"longname": "acrB"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_450 # 483725 # 484918 # -1 # ID=1_450;partial=00;start_type=ATG;rbs_motif=GAGG;rbs_spacer=7bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli acrA",
"hitorientation": "-",
"hitstart": 483725,
"hitstop": 484918,
"longname": "Escherichia coli acrA"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_451 # 485060 # 485707 # 1 # ID=1_451;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli acrR with mutation conferring multidrug antibiotic resistance",
"hitorientation": "+",
"hitstart": 485060,
"hitstop": 485707,
"longname": "Escherichia coli acrR with mutation conferring multidrug antibiotic resistance"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_526 # 567614 # 567946 # 1 # ID=1_526;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=11bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 100.0,
"hitname": "Escherichia coli emrE",
"hitorientation": "+",
"hitstart": 567614,
"hitstop": 567946,
"longname": "Escherichia coli emrE"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_670 # 717997 # 718674 # -1 # ID=1_670;partial=00;start_type=GTG;rbs_motif=GAGGA;rbs_spacer=3bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 99.56,
"hitname": "kdpE",
"hitorientation": "-",
"hitstart": 717997,
"hitstop": 718674,
"longname": "kdpE"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_762 # 814586 # 814786 # 1 # ID=1_762;partial=00;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 29.41,
"hitname": "AAC(3)",
"hitorientation": "+",
"hitstart": 814586,
"hitstop": 814786,
"longname": "AAC(3)-IIb"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_82 # 91581 # 93347 # 1 # ID=1_82;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=12bp;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 53.11,
"hitname": "Haemophilus influenzae PBP3 conferring resistance to beta-lactam antibiotics",
"hitorientation": "+",
"hitstart": 91581,
"hitstop": 93347,
"longname": "Haemophilus influenzae PBP3 conferring resistance to beta-lactam antibiotics"
},
{
"analysis": "Antimicrobial Resistance",
"contigid": "LT615373.1_870 # 926045 # 927277 # 1 # ID=1_870;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;gc",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic.fna",
"hitcutoff": 97.07,
"hitname": "Escherichia coli mdfA",
"hitorientation": "+",
"hitstart": 926045,
"hitstop": 927277,
"longname": "Escherichia coli mdfA"
},
{
"analysis": "Serotype",
"contigid": "n/a",
"filename": "GCA_900096815.1_Ecoli_AG100_Sample2_M9_Assembly_genomic",
"hitcutoff": "90",
"hitname": "O16:H48",
"hitorientation": "n/a",
"hitstart": "n/a",
"hitstop": "n/a",
"probability": "n/a"
}, from spfy.
kevinkle
commented on June 12, 2024
done in #306
from spfy.
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