swart-lab Goto Github PK
Name: Swart lab
Type: Organization
Swart lab's Projects
bleties
IES retention analysis from PacBio CCS reads
bleties-test-ptet
Benchmarking BleTIES with simulated long reads
bleties-test-tthe
Benchmarking BleTIES with Tetrahymena long read data
codetta
eugene
Eugene is an integrative genome annotation software
gbtquick
lazy person's blobtools2
hisat2
Graph-based alignment (Hierarchical Graph FM index)
icop_code
Software for analysis of data associated with investigations of Paramecium ICOP proteins
ies_nuc_density
Scripts and notebook for analysis IES nucleosome densities
intronarrator
Gene prediction using empirically determined introns
karyocode-analysis-busco
karyocode-analysis-porc
karyocode-workflow
loxodes-assembly-workflow
loxodes-bleties-workflow
loxodes-intronarrator-workflow
Empirical intron annotation for Loxodes magnus genome assembly
loxodes-kmer-comp
loxodes-nucleosomes-workflow
loxodes-pogigwasc-workflow
Pogigwasc gene prediction of Loxodes magnus genome
loxodes-srna-workflow
small RNA library processing and analysis
mnutils
MNase-seq utilities
parties
PARamecium Toolbox for Interspersed DNA Elimination Studies
pogigwasc
Prediction of genes in genomes with ambiguous stop codons
pogigwasc-utils
porc
Prediction Of Reassigned Codons
porechop
adapter trimmer for Oxford Nanopore reads
telomere-kmer-search
trf_utils
Scripts to reformat TRF output files
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