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alphafold

Open source code for AlphaFold.

aneva-dot

Tests Allelic Expression data for extreme imbalance w.r.t. population

awesome-single-cell

List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

ballgown

Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.

cas9fatemapping

Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system

cellchat

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data

cellphonedb

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

colabdesign

Making Protein Design accessible to all via Google Colab!

cotech

dappl

Script repository for DAPPL

dbit-seq

deeplearninglifesciences

Example code from the book "Deep Learning for the Life Sciences"

demeter2

Inference of gene dependency from RNAi screening datasets.

demo-helloworld-streamlit

depix

Recovers passwords from pixelized screenshots

drosophila-midgut-analysis

Analysis scripts for 'A cell atlas of the adult drosophila midgut'

e-mtab-6141

Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.

flusense-data

flyphonedb

flypn

Workflows and analysis of scRNA-seq of Olfactory Projection Neurons for Li, Horns et al. (2017)

gficf

An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization

hellojulia.jl

intermine-ws-python-docs

Tutorials for the InterMine Python web client

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster

lipidomic-analysis-young-and-aged-mouse-tissue

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

mitoa-analyser-tool

mitograph

Software for Quantifying Mitochondrial Content in Live Cells

mitograph_distance

Measure the distances between 3D particle position and closest points of the vtk surface file