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63_immune_cells

Gene expression profiles of 63 immune cell types

adrtarget

Machine learning guided association of adverse drug reactions with in vitro off-target pharmacology

awesome

😎 Awesome lists about all kinds of interesting topics

awesome-network-analysis

A curated list of awesome network analysis resources.

clinicaltrials

complexheatmap-reference

Documentation of ComplexHeatmap package

cruk-summer-school-2018

Summer school course materials collection

cytocompare

CytoCompare: an R Package for Computational Comparisons of Cytometry Profiles.

deeppath

Classification of Lung cancer slide images using deep-learning

faers-toolkit

Tools for data analysis for the FDA Adverse Event Reporting System (FAERS) dataset

fiji_macros

gbm_surv_sig

Gene signature analysis of TCGA glioblastoma data

icma

Cardiac ultrasound and MRI image processing and analysis

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

immunetopography

Analyze topography of tumor-infiltrating immune cells in histological images (QuPath/Matlab)

immunophenogram

in-depth-ngs-data-analysis-course

Materials for 12-day course on analyzing RNA-Seq, ChIP-Seq and variant calling data.

intro-to-r-with-dge

intro-to-rnaseq-hpc-o2

This repository has teaching materials for a 2 and 3-day Introduction to RNA-sequencing data analysis workshop using the O2 Cluster.

krumlovsinglecelltx2018

single cell transcriptome workshop in Krumlov, Jan 2018

lincs-workshop-2020

CMap Notebooks for LINCS 2020 Workshop

ngs-workflows

Source code, data and documentation to demonstrate automation in NGS data analysis

openfda

openFDA is a research project to provide open APIs, raw data downloads, documentation and examples, and a developer community for an important collection of FDA public datasets.

openfdashinyapps

R Shiny apps that use openFDA data.

pathway-mapper

An interactive and collaborative graphical curation tool for cancer pathways

pathwayrunner

PathwayRunner computed enrichment of gene set(s) in all pathways using hypergeometric test

pfb2017

qupath

QuPath - Open Source Digital Pathology

r-bioconductor-for-single-cell-rnaseq-data-analysis

R/Bioconductor for single cell RNAseq data analysis meetup workshop material

rclinicaltrials

An interface to the clinicaltrials.gov API