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activityspace_jrsi2014

Theory and data for simulating fine-scale human movement in an urban environment

chik_ploscurrents_2015

Estimating Drivers of Autochthonous Transmission of Chikungunya Virus in its Invasion of the Americas

chikungunya-in-brazil-2013-2022

This collection refers to aggregate epidemiological data used in the article “Spatiotemporal dynamics and recurrence of chikungunya virus in Brazil: an epidemiology study” published at The Lancet Microbe, 2023 (in press). The individualized data can be provided on request to corresponding author.

covid19_ndmobility_forecasting

covid19optimalcontrol

Optimal control of the COVID-19 pandemic with non-pharmaceutical interventions

dispersal_tradeoffs

fever_mobility

Calling in sick: impacts of fever on intra-urban human mobility

install-guide

iquitosim_ploscompbio_2019

code for IquitoSim agent-based model of dengue virus transmission

malaria_serial_interval

generation and serial intervals for P. falciparum malaria

movement

R package containing useful functions for the analysis of movement data in disease modelling and mapping

panoptes

Eyes on your data

ploscompbio_2013

code for generating figures and table from doi:10.1371/journal.pcbi.1003327

sarscov2_blcm

sarscov2_unobserved

Estimating unobserved SARS-CoV-2 infections in the United States

sarscov2_unobserved_example

ssm

Inference for State Space Models like playing with duplo blocks

td-stru

SSM tutorial classes

timeseriesspatialscale

Heterogeneous local dynamics revealed by classification analysis of spatially disaggregated time series data

yf_ensemble

zika_nmicrobiol_2016

Model-based projections of Zika virus infections in childbearing women in the Americas