tamartsi Goto Github PK

aclust

A-Clustering functions and analysis pipeline for methylation outcome data

additive_g-e_interaction

Test for additive gene-environement interaction

ancestry_specific_freqs

Code for computing ancestry-specific allele frequencies in admixed populations

association_analyses_class

Presentations and data set from a class about association analyses in admixed populations

binary_combine

Association tests of rare variants with binary outcome when combining heterogeneous studies.

binomirare

R package implementing the BinomiRare test for rare-variant-disease association, for pooled and meta-analyses.

bp-prs-ensemble

figures_repository

Repository for figure code

generalize

An R package to test (and display results) for generalization (and replication) of SNP-trait associations from one GWAS to another

genesis

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/GENESIS.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=GENESIS.

genesis-1

GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness

genetic_testing_awareness_sol

he_genetic_correlation

Code and documentation for computing genetic correlation using a Haseman-Elston type formula

heritability_cis

Computing confidence intervals for heritability (and other variance components)

metacor

An R package for stratified genetic association study, when individuals are correlated between the strata

multiple_correlated_secondary_outcomes_snp_set_test

Code for the test, and for generating simulated data, of the association of a SNP-set with multiple correlated secondary outcome in case-control sutyd.

noc_adjustment_to_estimate_ett

A negative outcome control approach to estimate ETT at the presence of unobserved confounding

osa_misclassification

Simulation study demonstrating the effect of OSA misclassification on power and bias

prs-from-paper-pmid-36174398

prss_for_admixed_populations

recso

Robust and Efficient Analysis using Control function approach, of a Secondary Outcome

remove_overlap_gwas_summary_stat

Remove the contribution of a set of individuals from a summary stat file. https://doi.org/10.5281/zenodo.7041630

sdb_gene_expression_associations

Results from Sofer and Li et al., EBioMedicine, 2020

sleepiness_methylation

variant_specific_inflation

Computing and studying variant-specific inflation expected due to stratified variance