Comments (2)
@Homap ALLMAPS translates coordinates through .chain
file. Please see documentation on this here.
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@tanghaibao Thanks, it worked very well!
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Related Issues (20)
- AttributeError: 'LayoutLine' object has no attribute 'color'
- Error when I want to generate a pdf. HOT 1
- Error when trying to generate pdf plots of anchoring a genome to a genetic map HOT 1
- Miscellaneous chromosome sorting HOT 3
- jcvi.assembly.allmaps path error HOT 4
- why same gene can appear in different synteny block? HOT 4
- RuntimeError HOT 4
- Problems with .anchors file results HOT 2
- ALLMAPS KeyError: 'CHR01_1133501' HOT 3
- How to draw lines to the inside HOT 5
- How to generate a transparent collinear images HOT 1
- lastal: I was installed here with multi-threading disabled HOT 1
- How to use genetic map (markers.csv) file to scafold a haplotype phased assembly from contig level to pseudochromosome level. HOT 5
- How genes in blocks files are connected with layout file in microsynteny plot? HOT 5
- ValueError when running "python -m jcvi.graphics.synteny" HOT 2
- Create the input file for MSTMap
- What is the meaning of x-axis and y-axis? Does it represent the number of genes? HOT 2
- Genes plotted in the wrong position HOT 2
- AttributeError: 'LayoutLine' object has no attribute 'color
- WARNING Shade: None found in coordinates, skipping HOT 2
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