core dump on mapping

[GoogleCodeExporter]

core dump on mapping

[GoogleCodeExporter]

I went to the forums and dug around. 

It seems to work if I add "--genomeSAindexNbases 2" to the index generation 
step, as suggested by another user for small genomes.

I still consider a core dump a bug however :-)

Could you stat() the genome files to estimate the genome sizes and auto-choose 
good parameters to avoid this problem?

Original comment by [email protected] on 6 Jun 2013 at 6:26

[GoogleCodeExporter]

Hi Torsten,

this is indeed a bug and hope to have a fix ready for the next release in ~July.

Thanks, Alex

Original comment by [email protected] on 8 Jun 2013 at 2:31

• Changed state: Started