tcezard Goto Github PK
Name: Timothee Cezard
Type: User
Company: EBI
Location: Hinxton
Timothee Cezard's Projects
accession-commons
Generic library for accessioning any type of object
bioconda-recipes
Conda recipes for the bioconda channel.
biovalidator
JSON validator derived from AJV supporting ontology and taxonomy validation.
contig-alias
Service to provide synonyms of chromosome/contig identifiers
contig_name_converter
Convert between contig name convention of the same assembly
covid19dp-submission
Covid-19 data portal submissions
eva-accession
EVA non-human variant accessioning service
eva-assembly-ingestion
Automation for ingesting a new assembly for a species
eva-common-pyutils
EBI EVA - Common Python Utilities
eva-ebi-search-export
Scripts to export EVA data and metadata to EBI search
eva-internal-pyutils
Python utilities used for internal EVA processes
eva-opentargets
Workflow to map ClinVar trait names to ontology terms and prepare this information for submission to OpenTargets
eva-pipeline
Genomic variation pipeline for the European Variation Archive, implemented using Spring Batch
eva-seqcol
Java implementation of the sequence collection specification to represent INSDC assemblies
eva-sub-cli
EVA Submission Command Line Interface for Validation
eva-submission
Components that connect and automate main tasks in the EVA workflow
eva-submission-ws
Web services for EVA Submissions
eva-tasks
Code used to to perform tasks or one of analysis.
eva-tools
Tools compatible with the infrastructure of the European Variation Archive pipeline
eva-vcf-merge
Tool for merging large sets of VCF files
eva-web
Web front-end for the European Variation Archive
eva-ws
European Variation Archive REST web services API
hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
radmapper
Set of scripts to create denovo consensus and map the read back
reverse-lookup-spec
This is the temporary, unofficial home for the Reverse Lookup draft specification
seqcol-spec
Website for DRAFT specification docs for GA4GH Sequence Collections.
seqcolapi
tasc
TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.
variant-remapping
The pipeline for remapping VCF variants between two arbitrary FASTA assemblies.
variation-commons
Library of core components used by multiple EBI Variation projects
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