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automata-from-regex

A python program to build nfa, dfa and minimised DFA from given regular expression. Uses Tkinter for GUI and GraphViz for graphs.

aws-lambda-python-serverless-ci

bear

This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"

borzoi

RNA-seq prediction with deep convolutional neural networks.

breseq-cloud

breseq usable for free without installing or using the command line

buchhaltung-und-steuern-lernen

Buchhaltung und Steuern für UG lernen

calendso

Scheduling infrastructure for absolutely everyone.

chartdete

Context-Aware Chart Element Detection

cisregmodels

Scripts for building computational models of gene regulation with tensorflow

codebase

codonbert

Repository for mRNA Paper and CodonBERT publication.

daily-cognitive-eval

A web app that allows you to test your cognitive performance.

ddgscan

Scripts and facilities for in-silico mutagenesis with FoldX, Rosetta and ABAUCS1/2

deepexpression

deepseed

diffdock

Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking

dldl

Deeply Learning Deep Learning

dna-diffusion

🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

dnabert_2

The official implementation of DNABERT-2.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

evo

DNA foundation modeling from molecular to genome scale

evoaug

Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics

evolution

This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'

expressiongan

expressiongan-pytorch

ExpressionGAN implementation in PyTorch

fbgan

genesis

Deep Exploration Networks - Diverse Deep Generative Models for DNA, RNA and Protein Sequences

gflownet

GFlowNet library specialized for graph & molecular data

langchain-chat-nextjs

Next.js frontend for LangChain Chat.

lineformer

Line Chart Data Extraction: Official code for LineFormer - ICDAR23 Paper