teichlab Goto Github PK

ali_covid19

Repo with analysis code for the ALI_COVID19 paper

basecloud

Base R/python/etc. internal OpenStack cloud setup for Teichlab

basespace_fq_downloader

A fastq downloader from basespace that actually works.

bbknn

Batch balanced KNN

bbknn_preprint

Archival notebooks from the BBKNN preprint, removed from the paper

bin2cell

Join subcellular Visium HD bins into cells

bracer

BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data

capatsv

Cellranger ATAC Peak Annotation, sourced from Cellranger ATAC v2.1.0

cell2tcr

Inference of TCR motifs

cellhint

A tool for semi-automatic cell type harmonization and integration

cellity

celloline

cellphonedb

cellphonedb-data

celltypist

A tool for semi-automatic cell type classification

celltypist_wiki

Materials and scripts for building cell type encyclopedia table

covid-19_challenge_study

covid-19paed

covid19_ms1

Analysis notebooks for "SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes".

covid19_oral

davion

A python preprocessing library for genomic data

drug2cell

Gene group activity utility functions for Scanpy

embl-single-cell-course-2016

Material for lecture at the EMBL Single Cell Course 2016

g2g_notebooks

Analysis notebooks for G2G MS

gene2probe

Pipeline for designing custom probes against human genes

genedistfinder

Alignment tests for reference and query single cell datasets

genes2genes

Aligning gene expression trajectories of single-cell reference and query systems

gpfates

hca_heart_ver2

innate_evo