Comments (4)
mfmezger
commented on May 22, 2024
3
I think this could be the same datasets that Fabian Iseensee used in the nnU-Net: a self-configuring method for deep learning-based biomedical image segmentation paper. Link to the paper Nature
Quote from the data availability chapter:
"All 23 datasets used in this study are publicly available and can be accessed via their respective challenge websites as follows. D1–D10 Medical Segmentation Decathlon, http://medicaldecathlon.com/; D11 Beyond the Cranial Vault (BCV)-Abdomen, https://www.synapse.org/#!Synapse:syn3193805/wiki/; D12 PROMISE12, https://promise12.grand-challenge.org/; D13 ACDC, https://acdc.creatis.insa-lyon.fr/; D14 LiTS, https://competitions.codalab.org/competitions/17094; D15 MSLes, https://smart-stats-tools.org/lesion-challenge; D16 CHAOS, https://chaos.grand-challenge.org/; D17 KiTS, https://kits19.grand-challenge.org/; D18 SegTHOR, https://competitions.codalab.org/competitions/21145; D19 CREMI, https://cremi.org/; D20–D23 Cell Tracking Challenge, http://celltrackingchallenge.net/."
from medicalnet.
PeterMcGor
commented on May 22, 2024
Any new on this?
from medicalnet.
mfmezger
commented on May 22, 2024
no not yet. @cshwhale can you help?
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gallegi
commented on May 22, 2024
I wanna know about this too
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Related Issues (20)
- pretrain code
- same for network pretrain code
- What's the input resolution for the pretrained model
- The dataset list of 23 datasets for the pre-trained model HOT 1
- Landmark detection in 3D point clouds
- Starting experiments with MedicalNet; question one: what are parameters --input_D, --input_H, --input_W? HOT 2
- Sharing models through Hugging Face Hub
- Cannot load checkpoints
- on which datasets the models are pretrained ? HOT 1
- Is there any classification code ?
- Contribution to the Open Source Hugging Face community.
- resent 50pth HOT 2
- SRS
- If I want to transfer to my own dataset, do I have to preprocess my data in the same way as you mentioned in your paper?
- Pre-trained models' results
- Project dependencies may have API risk issues
- Classification code with modification of train.py and datasets/brains18.py HOT 16
- Query: Can this be used to identify Chronic Kidney Diseases with Ultrasound scans?
- How to get the pretrained model
- Utilizing resnet_50.pth for 3D Feature Map Extraction HOT 3
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