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Paired-end in Filter seq about kat HOT 3 CLOSED

tgac avatar tgac commented on August 12, 2024
Paired-end in Filter seq

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Comments (3)

maplesond avatar maplesond commented on August 12, 2024

Unfortunately currently not. You'll need to run kat filter seq on both files and then do a subsequent run on both files to ensure the output is properly paired, discarding those reads which are not found in both files.

This is a relatively simple feature to add into KAT though. I'll make sure it's in the next version.

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Takadonet avatar Takadonet commented on August 12, 2024

hey @maplesond, I see that you added this functionality into the latest branch. Any plans to release soon? Also does the new kat filter seq perform as describe above when using paired end?

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maplesond avatar maplesond commented on August 12, 2024

Yes: https://github.com/TGAC/KAT/releases/download/Release-2.3.0/kat-2.3.0.tar.gz

I'll close the case, although if there are any issues or it doesn't work how you'd expect it to feel free to reopen.

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