Thomas Hackl's Projects
Visualize whole genome alignments as linear maps
Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:
Conda recipes for the bioconda channel.
the z in bioinformatics
R-dummy-project
Supplementary code and data for endogenous mavirus-like elements in Cafeteria burkhardae genomes
A tool to circularize genome assemblies
Supplementary code and data for genomes of C.roenbergensis: E4-10P, BVI, Cflag and RCC970-E3
Super-scaffolding of draft genome assemblies with in silico mate-pair libraries derived from (closely) related references
Find endogenous viral elements in genomes
Multiple dropbox accounts on linux
Fast and accurate de novo assembler for single molecule sequencing reads
Gallery of ggplot2 extensions
A grammar of graphics for comparative genomics
Visualize Global-Scale Quantitative Data on World Maps with Projection and Shifted Central Meridian
Scripts for syncing local tsv files with google spreadsheets
Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.
Link phages and potential host by finding shared attachment sites for prophage integration
A fast multi-threaded k-mer counter
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
scripts for working with kmers - plots, filter, ...
Variant-Calling-Example
Determines Longhurst Province for a given Lat/Long coordinate
The code we use to render README.your_favorite_markup
Fast genome and metagenome distance estimation using MinHash
long-read-metabarcoding for eukaryotes
Find group-specific primer binding sites for amplicon metabarcoding
A few scripts for conversion of media files etc..