Comments (3)
I need couple of more concepts.
- splice region synonymous variant
A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron where there is no resulting change to the encoded amino acid - splice region non coding exon variant
A transcript variant occurring in the splice region within1-3 bases of the exon of a non coding transcript
from so-ontologies.
Hi @iamdna I am looking at terms around this area of the ontology. I wonder if instead of creating a new term, we might be better off editing the existing term "extended_intronic_splice_region_variant" (SO:0001995) and moving it under "splice_region_variant". What do you think?
from so-ontologies.
And @iamdna I'm sorry for the trouble, but would you please create separate new term requests for the other two concepts you'd like us to look at? Thank you.
from so-ontologies.
Related Issues (20)
- non_protein_coding_variant HOT 1
- protein_coding_variant HOT 1
- uORF_variant
- miRNA_target_site_variant HOT 1
- branch_site_variant HOT 1
- promoter_variant HOT 1
- polyA_signal_sequence_variant HOT 1
- start_codon_variant HOT 1
- stop_codon_variant HOT 1
- enhancer_variant HOT 1
- NTR: c_terminal_region_variant
- NTR: CDS_variant HOT 1
- NTR: switch_of_function_variant HOT 2
- NTR: oncogenic_variant HOT 2
- NTR: miRNA_variant HOT 1
- NTR: Nucleosome_occupancy HOT 1
- SO sponsorship for submission of bioinformatics file formats for IANA Media Types ("MIME") registry? HOT 2
- 5_prime_UTR_uORF_variant HOT 1
- Fix definition of miRNA (SO:0000276) HOT 1
- NTR: range extender element HOT 3
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from so-ontologies.