Comments (5)
Also,
please take a look at and update these notebooks:
- https://github.com/theislab/cellrank_reproducibility/blob/main/notebooks/suppl_fig_uncertainty/ML_2020-01-10_uncertainty.ipynb
- https://github.com/theislab/cellrank_reproducibility/tree/main/notebooks/fig_5_benchmarking/palantir
from cellrank_reproducibility_preprint.
I cleaned both already.
The uncertainty analysis is not just supplemental but is also a part of main figure 4, you can find it in https://github.com/theislab/cellrank_reproducibility/blob/main/notebooks/fig_4_uncertainty/ML-2020-10-17_fig_4_uncertainty.ipynb. This is the cleaned version of the notebook you posted, so I deleted the one you posted.
For the palantir notebook, that is in the very folder you linked, cleaned up already.
from cellrank_reproducibility_preprint.
Great, thanks for the update!
from cellrank_reproducibility_preprint.
You're welcome.
from cellrank_reproducibility_preprint.
I've updated uncertainty notebook with the correct links, I think this can be closed.
from cellrank_reproducibility_preprint.
Related Issues (20)
- Clean up runtime performance HOT 1
- Clean up FateID comparison benchmarking HOT 1
- Clean up STEMNET comparison benchmarking HOT 1
- Clean up Palantir comparison benchmarking HOT 1
- Clean up robustness analysis HOT 1
- Clean pancreas main notebook for figure 2
- Clean up delta cell differentiation, Fig. 3
- Test if the pipeline works HOT 1
- Update comparison benchmarks HOT 2
- Clean the GPCCA toy example notebook
- Share the final conda environment. HOT 16
- Clean the main uncertainty notebook HOT 1
- Repo size HOT 4
- Fix date formatting HOT 5
- Print all relevant versions HOT 1
- Clean up the lung analysis
- Package requirements HOT 1
- Prettify the table in the README a bit HOT 2
- Untitled Notebook in the root directory HOT 1
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