Comments (4)
Hi,
Just published a new version with this issue fixed recently. Tutorials are also updated with the latest API. Sorry for the inconvenience. Please let me know if anything goes wrong.
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I'm also running into this issue, seems like VanillaEncoder
and DecoderNormal
expect n_cat_list
as a parameter with no default value specified?
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Awesome it's working for me now!
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Hi, Just published a new version with this issue fixed recently. Tutorials are also updated with the latest API. Sorry for the inconvenience. Please let me know if anything goes wrong.
Hello @Naghipourfar,
In the updated tutorial notebooks, it seems the trainer_params was assigned with arbitrary values (following is the example from the GSM.ipynb file:
trainer_params = {
'n_epochs_warmup': 5,
'adversary_lr': 0.0008847032648856746,
'adversary_wd': 9.629190571404551e-07,
'adversary_steps': 3,
'autoencoder_lr': 0.0007208558788012054,
'autoencoder_wd': 1.2280838320404273e-07,
'dosers_lr': 0.0008835011062896268,
'dosers_wd': 5.886005123780177e-06,
'penalty_adversary': 63.44954424334805,
'reg_adversary': 48.73324753854268,
'cycle_coeff': 7.19539336141403,
'step_size_lr': 25,
}).
I am wondering how these hyperparameter values were decided (randomly or by optimized tuning)? If the latter is correct, could you please share how to conduct hyperparameter tuning for CPA model?
Thank you very much, and I am looking forward to your feedback.
Kind regards,
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Related Issues (17)
- finish CPA implementation
- Hyperparameter optimization HOT 1
- TypeError: __init__() got an unexpected keyword argument 'checkpoint_callback' HOT 3
- updates need for scvi-tools 0.20
- Colab error when running setup_anndata() HOT 3
- Run CPA on Kang et al dataset without dosage information HOT 3
- AttributeError: module 'cpa' has no attribute 'CPA'
- tutorial CPAModule.init HOT 1
- Trained models
- ImportError due to torchmetrics HOT 6
- very different results from the notebook HOT 3
- AttributeError: 'tuple' object has no attribute 'copy' HOT 2
- Failed to run the notebook in colab HOT 4
- The versions for scvi-tools for CPA HOT 2
- Pre-processing for bulk RNA-seq?
- which version ? The theislab version or facebook version?
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