Siddhartha Dhiman's Projects
MATLAB script to segment 3D vasculature obtained from confocal microscopy, as well as to derive statistics
This problem requires the detection of imporperly filled bottles on a factory production line.
Bruker file I/O handling to standardize animal data
This process code automates bubble counting process for requirements such as quality control on a soft-drink manufacturing production line.
MATLAB script for generating statistics in calretinin images for control vs. diseases samples
MATLAB scripts to generate MST-based statistics on cells in control vs. diseased samples
A tool to recursively search for and sort dicom files regardless of folder structure
FSL docker container for Brainlife use
Fiber Ball Imaging (FBI) for white matter quantification
Fiber ball white matter modeling
A CLI tool to extract ROIs from Freesurfer's segmentation file
:necktie: A collection of cv and resume templates written in LaTeX. Leave an issue if your language is not supported!
Optimized firmware for RepRap 3D printers based on the Arduino platform.
Matlab geometry toolbox for 2D/3D geometric computing
Code and exercises related to course on Udemy
MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density
Python Port of NYU's DKI-Designer Pipeline
Use this template if you need a quick developer / data science portfolio! Based on a Minimal Jekyll theme for GitHub Pages.
A pipeline developed to process mRNA or miRNA data derived from RNA sequencing.
Concise, consistent, and legible badges in SVG and raster format
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
An app for managing ROMs in Steam
Tests source repo for GitHub actions
Tests compiler rep for GitHub actions
A CLI for generating report on NifTi BIDS sidecar (.json) to evalue study consistency
VISTASOFT is the main software repository of the VISTA lab at Stanford University.