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10xr2c2

Scripts for analyzing 10x R2C2 data

ads1-notebooks

Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing

c3poa

Computational pipeline for calling consensi on R2C2 nanopore data

cogaps

Bayesian MCMC matrix factorization algorithm

deep-k-svd

leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

miso

MISO: Mixture of Isoforms model for RNA-Seq isoform quantitation

outrigger

Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data

photoacoustic_laser_monitoring

sare_2021

scripts

singlecelltimecourse

Head and neck cancer rna velocity scripts

sockeye

Single Cell Transcriptomics

splicemutr