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al-folio

A beautiful Jekyll theme for academics

bdv-ui-panel-example

bigdataviewer-core

ImgLib2-based viewer for registered SPIM stacks and more

bigdataviewer-vistools

Helpers to use BigDataViewer as a quick visualization tool in other projects.

blur-pool-keras

Keras implementation of BlurPool layers described in "Making Convolutional Networks Shift-Invariant Again" (Zhang)

dog_pyramid

Example of how to use imagej-ops to build a DoG pyramid.

fopd-solver

go-nuclear

Guides and code for 3D nuclear instance segmentation

ij-command-2

imagej-common

ImageJ core data model

imglib2-algorithm

Image processing algorithms for ImgLib2

libics

Image Cytometry Standard file reading and writing.

marlin

Marlin is an optimized firmware for RepRap 3D printers based on the Arduino platform. | Many commercial 3D printers come with Marlin installed. Check with your vendor if you need source code for your specific machine.

oh-my-zsh

🙃 A delightful community-driven (with 1,300+ contributors) framework for managing your zsh configuration. Includes 200+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, php, python, etc), over 140 themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

plant-seg

A tool for cell instance aware segmentation in densely packed 3D volumetric images

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

pytorch-3dunet

3D U-Net model for volumetric semantic segmentation written in pytorch

reveal.js

The HTML Presentation Framework

simplified-io

Read, write, type convert images using simple methods.

stardist

StarDist - Object Detection with Star-convex Shapes

threedviewer

ThreeDViewer is an ImageJ/FIJI plugin for visualization and interaction with 3D data

tibuch.github.io

tutorials

ImageJ programming examples