timbitz Goto Github PK
Name: Tim Sterne-Weiler
Type: User
Company: @Genentech
Bio: RNA and Algorithms.
Location: San Francisco, CA
Tim Sterne-Weiler's Projects
aligater
Software suite for detection/analysis of chimeric RNAs from LIGR-seq data
bio.jl
Bioinformatics and Computational Biology Infrastructure for Julia
biosequenceskmers.jl
Kmers from BioSequences 2.0.5
brindleplots.jl
Visualization package for Whippet.jl
desalt
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
diffr
evoduplexes.jl
A Julia package to fold all local and long-range RNA duplexes.
fithichip
Statistically Significant loops from HiChIP data
fmindexes.jl
FM-index for full-text search
intervaltrees.jl
A data structure for efficient manipulation of sets of intervals
isosceles
The Isoforms from Single-Cell; Long-read Expression Suite
isosceles_paper
suffixarrays.jl
Native Julia suffix array implementation; Derived from sais
timbitz.github.io
vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
waveletmatrices.jl
The Wavelet Matrix
whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
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