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abc_atlas_access

Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

aisynphys

Analysis tools specific to the aiephys multipatch project.

allensdk

argschema

This python module simplifies the development of modules that would like to define and check a particular set of input parameters, but be able to flexibly define those inputs in different ways in different contexts.

bluepyopt

Blue Brain Python Optimisation Library

bmtk

Brain Modeling Toolkit

capsule-as-package-demo

demo of a Code Ocean capsule that can be imported directly as a package

codeocean_dotfiles

dotfiles for use on Code Ocean machines, managed by chezmoi

efel

Electrophys Feature Extraction Library

ipfx

nest-olivemodule

Module for inferior olive modeling in NEST Simulator

nest-simulator

The NEST simulator

neuroanalysis

Modular analysis tools for neurophysiology data

neuron_morphology

Tools for working with single-neuron morphological reconstructions

nrn

NEURON Simulator. (iv required for the GUI)

sonata

Collaboration between BBP and AIBS

swdb-2016

swdb_2019

Repository for course materials for the Summer Workshop on the Dynamic Brain 2019

swdb_2019-1

Repository for course materials for the Summer Workshop on the Dynamic Brain 2019

sweep_qc_tool

manual quality control for intracellular electrophysiology experiments

thalamus-merfish-analysis

Code Ocean capsule for sharing analysis of thalamus MERFISH data

translators

Zotero Translators

x-to-nwb

Convert various patch-clamp data formats to NWBv2