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Thomas Sandmann's Projects

awesome-crispr icon awesome-crispr

List of software/websites/databases/other stuff for genome engineering

aws-simple-ec2-cli icon aws-simple-ec2-cli

A CLI tool that simplifies the process of launching, connecting and terminating an EC2 instance.

bayesrules icon bayesrules

Code and notes I took working through the Bayes Rules! book

cfncluster icon cfncluster

CfnCluster is a framework that deploys and maintains HPC clusters on AWS.

degust icon degust

A web tool for visualising differential gene expression data

fastbook icon fastbook

The fastai book, published as Jupyter Notebooks

fastpages icon fastpages

An easy to use blogging platform, with enhanced support for Jupyter Notebooks.

flasky icon flasky

My version of https://github.com/miguelgrinberg/flasky to follow the walk-through in the Flask Web Development book

ftl-fundamentals icon ftl-fundamentals

Exercises in the fundamentals of Go, to accompany the book 'For the Love of Go: Fundamentals', by John Arundel.

iseede icon iseede

iSEE extension for panels related to differential expression analysis

iseeindex icon iseeindex

iSEE extension for a landing page to a custom collection of data sets

labs icon labs

Rmd source files for the HarvardX series PH525x

luigi icon luigi

An R package implementing a plumber API for gene set enrichment analysis

mbl2017 icon mbl2017

Material for the neuroscience course at MBL, June 2017

mbl2018 icon mbl2018

Code used at the Neurobiology course at MBL in Woods Hole in 2018

mbl2019 icon mbl2019

Code repository for the Neurobiology Genomics section at MBL in 2019

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