Thomas Sandmann's Projects
Streamlit applications associated with the 30 days of Streamlit tutorial
List of software/websites/databases/other stuff for genome engineering
A CLI tool that simplifies the process of launching, connecting and terminating an EC2 instance.
Code and notes I took working through the Bayes Rules! book
Docker containers for Bioconductor
Thomas blog
Thomas Sandmann's personal blog - archived
CfnCluster is a framework that deploys and maintains HPC clusters on AWS.
Jupyter notebooks for the code samples of the book "Deep Learning with Python"
Working my way through the Deep Learning with PyTorch book and the associated code
A web tool for visualising differential gene expression data
Efficient R programming: a book
Modular & interactive analysis modules
Interactive visualizations for FacileData
The fastai book, published as Jupyter Notebooks
An easy to use blogging platform, with enhanced support for Jupyter Notebooks.
My version of https://github.com/miguelgrinberg/flasky to follow the walk-through in the Flask Web Development book
Exercises in the fundamentals of Go, to accompany the book 'For the Love of Go: Fundamentals', by John Arundel.
gCMAP Bioconductor package
gCMAPWeb Bioconductor package
iSEE extension for panels related to differential expression analysis
iSEE extension for a landing page to a custom collection of data sets
Rmd source files for the HarvardX series PH525x
An R package implementing a plumber API for gene set enrichment analysis
Material for the neuroscience course at MBL, June 2017
Code used at the Neurobiology course at MBL in Woods Hole in 2018
Code repository for the Neurobiology Genomics section at MBL in 2019