tomsmithcgat Goto Github PK

2014-07-camr

2018-10-17-test

bandle

An R package for Bayesian analysis of differential localisation experiments

bioconda-recipes

Conda recipes for the bioconda channel.

camprot

Modules for diverse proteomics analysis

camprot_r

R functions for proteomics analysis

cell_barcode

clipseq

CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.

conda_envs

ymls for conda environments

dotfiles

configuration files

egf_stimulation

eif5a_hypusination_inhibition_silac

A dynamic SILAC experiment to explore the impact of eIF5A hypusination inhibition by GC7 on nascent protein

encode_eclip

Download ENCODE eCLIP data and parse

greenalgorithms4hpc

idemuxcpp

Idemux is a command line tool designed to demultiplex paired-end fastq files from QuantSeq-Pool.

lysine_mod

Analysis of the localisation and function of lysine acylated proteins

mgatk

mgatk: mitochondrial genome analysis toolkit

mim-trnaseq

Modification-induced misincorporation tRNA sequencing

nml_notebooks

nnlm

Nonnegative Linear Models (NNLM) and Nonnegative Matrix Factorization (NMF or NNMF).

optproc

R package for benchmarking spatial proteomics processing workflows

pipeline_example

A repo to keep tests for drmaa, ruffus and cgat-core.

project026

project026 pipelines and scripts

project38

Project 038 source code

proloc

A unifying bioinformatics framework for organelle proteomics

prolocext

Utility functions and pRoloc wrappers for spatial proteomics analyses and plotting

prot_data_analyis

Testing ground for Proteomics Data analysis

proteomics_linear_modeling

Short workshop to demonstrate some uses of linear modeling in proteomics

proteomics_sandbox

Directory for development of proteomics analysis. Notebooks, raw data and code in early Alpha

proteomicspractical