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Hi there 👋

  • 🔭 I’m working on improving the tools VSEARCH and Swarm for microbiome bioinformatics.
  • 🤔 I’m often thinking about new ideas for how we can use clever algorithms and data structures to improve bioinformatics tools.
  • I'm teaching the course IN4030 Introduction to bioinformatics at the University of Oslo every spring semester.
  • In the fall of 2024, I'll be organizing the course IN-BIOS5000/9000 Sequencing technologies, data analysis, and applications.
  • I'm also involved in various projects at Oslo University Hospital (OUS), including Publika, a publication database for OUS.

Torbjørn Rognes's Projects

compairr icon compairr

Comparison of Adaptive Immune Receptor Repertoires

hocort icon hocort

HoCoRT - Remove specific organisms from sequencing reads

inf9380 icon inf9380

High-Performance Computing in Bioinformatics

kmercount icon kmercount

Simple kmer counter using Bloom filter and efficient hash function

libsdb icon libsdb

Library for reading sequence databases

libssa icon libssa

Library for SIMD accelerated optimal Sequence Alignments

swarm icon swarm

A robust and fast clustering method for amplicon-based studies

swipe icon swipe

Smith-Waterman database searches with inter-sequence SIMD parallelisation

vsearch icon vsearch

Versatile open-source tool for microbiome analysis

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