transcript Goto Github PK

analysis-engine-samples

Public code samples for using the Priceonomics Analysis Engine

bettametadata

A parsing script that helps clean up BioSample metadata by trying to smooth into controlled vocabulary. Created as part of ASM NGS hackathon 2018.

cog

Scripts and steps for making a consolidated COG database file for tools like DIAMOND.

dnanexus_apps

App and applet code for the DNAnexus platform.

gitfiti

macaqueicd

Python, R, and bash scripts used for analysis of rhesus macaque gut microbiomes for ICD

mg-rast_interfacing

Scripts that making working with MG-RAST a bit easier.

newton

Scholar, a Slack integration for finding relevant papers. Powered by Watson's Natural Language Understanding.

ngmerge

Merging paired-end reads and removing adapters

samsa

Programs and documentation for the SAMSA pipeline, version 1.0

samsa2

SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customizable reference databases.

shi7

smartamp_primerdesign

A code that automatically builds primers for a Smart Amplification PCR run, using Python.

subsystems

Code for making bioinformatics work with the SEED subsystems database a little easier.

travelbot

wftd_bot

A bot built for Slack, coded in Python, designed to track the number of words written in an author's group.