Vinh Tran's Projects
an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.
Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala
Conda recipes for the bioconda channel.
Self-contained repo for interactive stats-driven presentations
DCC: dynamic compilation of core gene sets
Status images for your dockerhub automated build (like those for travis)
DrWhy is the collection of tools for Explainable AI (XAI). It's based on shared principles and simple grammar for exploration, explanation and visualisation of predictive models.
Python package for fCAT, a feature-aware completeness assessment tool
UI for visualising fCAT results
Feature-aware Directed OrtholoG search
Eukaryotic Genome Annotation Pipeline
Genetic testing
Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.
conda recipe for HaMStR
R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)
This is the code behind the www.impute.me site. It contains algorithms for imputing personal genomes, as well as a range of custom-made analysis for genetics-based disease and health.
If you build software, keep a changelog.
getting data out of KEGG w/o any subscription
An R :package: for fast and flexible DNA methylation analysis
Nextstrain build for novel coronavirus (nCoV)