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  • šŸ‘‹ Hi, Iā€™m Vinh
  • šŸ‘€ Iā€™m interested in bioinformatic tools, data analysis and visualisation
  • šŸŒ± Iā€™m currently learning ML using R and Python
  • šŸ“« You can reach me via email [email protected]
  • šŸš§ Main projects:
    • PhyloProfile | R package for visualizing and analyzing multi-layers phylogenetic profiles
    • fDOG | Python package for feature-aware targeted ortholog searches
    • fCAT | Python package for assessment of genome annotation completeness and quality
    • taxFun | R package for working with NCBI taxonomy data

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Vinh Tran's Projects

admix icon admix

an admixture analysis tool for Python that supports raw data from 23andme, AncestryDNA, etc.

bfg-repo-cleaner icon bfg-repo-cleaner

Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

dcc icon dcc

DCC: dynamic compilation of core gene sets

drwhy icon drwhy

DrWhy is the collection of tools for Explainable AI (XAI). It's based on shared principles and simple grammar for exploration, explanation and visualisation of predictive models.

fcat icon fcat

Python package for fCAT, a feature-aware completeness assessment tool

fdog icon fdog

Feature-aware Directed OrtholoG search

hamstr icon hamstr

Feature-aware orthology prediction tool. Provided data package: Quest for Orthologs reference gene sets 2019.

immosaic icon immosaic

R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)

impute-me icon impute-me

This is the code behind the www.impute.me site. It contains algorithms for imputing personal genomes, as well as a range of custom-made analysis for genetics-based disease and health.

methrix icon methrix

An R :package: for fast and flexible DNA methylation analysis

ncov icon ncov

Nextstrain build for novel coronavirus (nCoV)

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