trvrb Goto Github PK

ancestry

Tracing coalescent histories

anonymous-slack

A Heroku service that lets you send anonymous messages to colleagues on Slack.

antigen

Simulating virus evolution and epidemiology

canalization

Manuscript: Canalization of the evolutionary trajectory of the human influenza virus

coaltrace

Simulating genealogies using charged particles

demo-project

Demo for TFCB 2018

divergence

Illustration of Darwin's Principle of Divergence

dynamics-practical

Inferring spatiotemporal dynamics of the H1N1 influenza pandemic from sequence data

ebola-narrative-ms

ebola-nord-kivu

flutrace

Visualizing influenza global circulation patterns

flux

Integrating influenza antigenic dynamics with molecular evolution

gs541-phylodynamics

Lectures and materials for GS541 Introduction to Computational Molecular Biology

gs541-phylogeography

haplotypes

Visualizing evolution as a network of shared mutations

homebrew

The missing package manager for OS X.

homebrew-science

Scientific formulae for the Homebrew package manager

lassa

Nextstrain builds for Lassa

malaria-sieve

Analysis of sieve effect of RTS,S malaria vaccine

medium-data

Talk on data and visualization

my-boxen

Copy me for your team.

pact

Posterior Analysis of Coalescent Trees

phylodynamics-lecture

Lecture on viral phylodynamics

puppet-beast

Install BEAST (Bayesian Evolutionary Analysis by Sampling Trees) via Boxen / Puppet

puppet-r

Install R statistical computing package via Boxen / Puppet

refdown

Easy referencing for scholarly Markdown

sctrace

Simulating migration patterns using charged particles

selsim

population genetic simulation

setup

Reproducible system setup

sismid

Pathogen evolution, selection and immunity