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airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

annocript

Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.

annotation_models

batch-minimal-example

bluetooth-sync

cache-genetic-evidence

cnvkit

Copy number variant detection from targeted DNA sequencing

cwl_viral_pipeline

ebi-playground

Small snippets of code for the EBI

epmc-ambiguity

eva-opentargets

Workflow to map ClinVar trait names to ontology terms and prepare this information for submission to OpenTargets

eva-web

Web front-end for the European Variation Archive

google-location-history

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

json_schema

Open Targets target-disease association schema

llm-experiments

metadata-ws

Generic REST API for submission metadata objects (usable by AMP T2D, EGA and EVA)

mutation-pairs

nextflow

A DSL for data-driven computational pipelines

opentargets-test

read_alignment

unix

validator

vep-mapping-pipeline

A pipeline which uses Ensembl VEP REST API to map input variants to their most severe functional consequence and gene information

vimeo-audio-video

Download segmented video from Vimeo