ttriche Goto Github PK
Name: Tim Triche, Jr.
Type: User
Company: Van Andel Research Institute
Bio: Chief cook and bottle washer, trichelab.vai.org
Location: Grand Rapids, Michigan
Blog: http://trichelab.org/
Name: Tim Triche, Jr.
Type: User
Company: Van Andel Research Institute
Bio: Chief cook and bottle washer, trichelab.vai.org
Location: Grand Rapids, Michigan
Blog: http://trichelab.org/
templated repo for a Carpentries workshop
:microscope: De novo genome sequence assembler to assemble large genomes using short reads
for anthony
Data and vignettes with helper functions to determine AML cell-of-origin based on reference cell types.
Provides a simple R script that transforms API query results into GAlignments.
processed HDF5 files for artemis examples
ATACseq tools for Bioconductor
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
Slice and dice controlled-access BAMs for thousands of samples
toy statistical analysis of Americans killed, by "vetting" status for country of killer's citizenship (counts subject to change)
Bayesian Consensus Clustering, packaged up from code by Eric F. Lock
R package to perform Bayesian screening for genomic data
Xing et al's BayesianChangePoint peak caller. Currently requires patching to install as an R package.
Bayesian Epiallele Detection (BED)
bifurcatoR package
Example BigQuery integrations. Includes both sql and R wrappers.
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
Challenges and opportunities from integrative analysis of multi-omic data sets
go directly to https://github.com/ttriche/biocMultiQc2015/blob/master/vignettes/multiAssay.Rmd
a proof of concept for stuffing SciDB-backended summarized experiments into a joint container
Source code for the Bioconductor website
Bioconductor facilities for parallel evaluation (experimental)
Tools for bioinformatics
a small package of bsseq tools for Biscuit output
interested in using diagnostics from this package
align BS-Seq reads and extract methylation without intermediate temp files
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.