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Institute for Cellular and Molecular Medicine's Projects

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hie_genetic_data_analysis icon hie_genetic_data_analysis

This repository contains scripts for the analysis of genetic variant data on genes associated with hypoxic ischemic encephalopathy (HIE). This work was completed in partial fulfillment of an MSc in Medical Immunology at the University of Pretoria by Megan A Holborn.

pharmacogenetic-analysis-pipeline icon pharmacogenetic-analysis-pipeline

A Snakemake powered pipeline developed to perform variant-effect-prediction and frequency analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

population-structure-workflow icon population-structure-workflow

A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

vcf-validation-workflow icon vcf-validation-workflow

A Snakemake powered pipeline developed to perform quality control and data preparation given individual Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.

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