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bbmap

(Not Offical) BBMap short read aligner, and other bioinformatic tools.

deeptools

Tools to process and analyze deep sequencing data.

denr

Select the most actively transcribed transcript model using PRO-seq

flna_analysis

All used scripts for the analysis of molecular dynamics simulation trajectories of wild-type and mutant FLNA systems.

ggstride

Protein Secondary Structure Analysis and Visualization for Trajectories

m1ap_analysis

The codes used in to analyze the meiosis 1-associated protein (M1AP) model in comparison with its mutant forms observed in the patients diagnosed with non-obstructive azoospermia and cryptozoospermia.

mexnab_3seq

Analysis for Tudek et al and Schmid et al

ms_metagene_tools

various tools and addons to fidelrams deepTools python suite

nascentrnasim

A package for empirical simulation of nascent RNA data

r-bioc-limma

rmetatools

R package with various tools for metagene analysis

rnaseq_coexpression

In-depth analysis of normalization and transformation methods for building coexpression networks from RNA-seq data.