Comments (2)
Yes! You can adjust params.freyja_demix_options
.
In a config file it looks like
params.freyja_demix_options = '--depthcutoff 10'
On the command line it would look like
<your typical command> --freyja_demix_options '--depthcutoff 10'
I'll look into setting the default for freyja demix to align better with the minimum_depth
parameter.
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Great, thanks for the quick response!
I will update my config and run again.
-Wes
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