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course

emphasis-layer

gene-expression-plotter-eosc-life-demonstrator

A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype). This project integrates data from 'fairdomhub'.

geneexpressionplots

A Javascript based tool to visualize gene expression over a custom discrete variable (e.g. time) and grouped by another (e.g. tissue or genotype).

gfftk

GFF toolkit to work with GFF files

joseph_atemias_labbook

This repository is used to provide a Wiki that Joseph Atemia can use as a lab-book in which every step taken in scientific work is documented. Also documents that might be important can be shared here.

mapman-mercator-4

To reprorduce figures etc

mapman2go

Maps MapMan-Bins to compound Gene Ontology Term Annotations (GOA).

mibinet_db_spa

physiospace_shiny

A Rmarkdown shiny front-end to github.com/JRC-COMBINE/PhysioSpaceMethods

physiospacemethods

prot-scriber

Assigns short human readable descriptions to biological sequences or gene families using references. For this, prot-scriber consumes sequence similarity search results in tabular format (Blast or Diamond).

robina

This is Robina Arcas featuring Isoform and in the future single cell analysis. Uses Kallisto

scviz

For visualization of single cell transcriptomics.

teaching

Just getting started with assembly and RNA

trimmomatic

untwistapp

A tool for visualization of phenotypic data, GWAS analysis and some Bioinformatics tools

usadellab.github.io