Comments (1)
Just wanted to give an update. Figured out that one needs to use 'readRDS()' in order to load all of the chains back into R. Great program! Thanks!
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Related Issues (20)
- Quick fix: parallel for steppingstone
- Prob of shift proportional to branch length maybe broke on dev version? HOT 2
- ERROR IN BAYOU.MCMC: error: matrix multiplication: incompatible matrix dimensions: 74x15 and 1x1 Error in C_weightmatrix(cache, pars) : matrix multiplication: incompatible matrix dimensions: 74x15 and 1x1 HOT 2
- Tutorial does not reflect updates HOT 1
- bayou2OUwie error HOT 2
- makeBayouModel should check if the predictor has NAs and impute=FALSE
- Error with plot functions bayou package
- Error in mcmcOU$run:Error in summary.connection(x) : invalid connection
- make.refFn error for bounded distributions on continuous parameters
- After read the bayou/tutorial.md, i still don't know how to set the parameters?
- Can not install on mac
- Convergent evolution
- plotSimmap.mcmc/phenogram.density when no shifts are large
- Shouldn't have to specify starting parameters when the model has fixed parameters
- Numerical errors when the data have a very small variance
- summary.bayouMCMC has errors summarizing location
- Likelihood is wrong when alpha is fixed to 0 using 3 point algorithm HOT 1
- Feature request: Function to extract the posterior of the regression line from shiftSummary
- Feature request: function to extract the raw value of a trait from each regime
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