vallebueno Goto Github PK
Name: Miguel Vallebueno
Type: User
Company: Gregor Mendel Institute
Miguel Vallebueno's Projects
admixture_graph
Module for analysing admixture graphs
ancientlabprotocols
collabs
containers
Bioinformatics containers
copenhagen
Analysis of genotyping and next-generation sequencing data in medical and population genetics
deepvariant
Google's DeepVariant variant caller as a Nextflow pipeline
docker-eigensoft
Dockerised EIGENSOFT software (https://github.com/DReichLab/EIG)
eager
A fully reproducible and state-of-the-art ancient DNA analysis pipeline
eig
Eigen tools by Nick Patterson and Alkes Price lab
git-collaboration
A repository to demonstrate collaboration workflows
internship_scripts_kn
kmap
lab_code
Code developed in Swarts lab
lcwgs-guide-tutorial
misc_python
miscellaneous code for manipulating genetic data
ngstools
Programs to analyse NGS data for population genetics purposes
origin
ppp
Repository for pipeline code
tess3_encho_sen
TESS3 is a fast and efficient program for estimating spatial population structure based on geographically constrained non-negative matrix factorization and population genetics.
vallebueno.github.io
vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
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