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aptaflow

assocplots

barrnap

:microscope: :leo: Bacterial ribosomal RNA predictor

bedtools2

bedtools - the swiss army knife for genome arithmetic

biomarkovchains.jl

Representing biological sequences as Markov chains

copynumberplots

R package to create plots representing copy number data using karyoploteR

django-rest-framework

Web APIs for Django.

django_mixs

epacts-data

espaltherma

Monitor your Daikin Altherma / ROTEX heat pump with ESP32

exomiser

A Tool to Annotate and Prioritize Exome Variants

funannotate

Eukaryotic Genome Annotation Pipeline

genefinder.jl

A Gene Finder framework for Julia.

genomicmaps.jl

Julia package for visualising genomic data

jbrowse-jupyter

Jupyter Notebooks extension for showing JBrowse views

karyoploter

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

mip-rsch-pipe

orfipy

Fast and flexible ORF finder

pipetaxon

PipeTaxon exposes the ncbi taxonomy database as a REST API.

prokka

pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

python-client

Python client library for Core API.

qiime2

Official repository for the QIIME 2 framework.

seqtk

Toolkit for processing sequences in FASTA/Q formats

splicev

Visualize coverage, canonical, and backsplice junctions.

stringdb-beacon

Knowledge Beacon Wrapper for the StringDb resource (https://string-db.org/)

tagseq-qiime2-snakemake

Pipeline to run qiime2 with snakemake

templated-docs

Generate PDF, MS Word and Excel documents from templates in Django

viroverse

a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows