Comments (1)
You are correct, this is a capability that the aligners in vg
do not have. It would be a valuable addition, but I don't know of any near-term plans to implement split-read alignment.
from vg.
Related Issues (20)
- Augmentation failed on one chromosome, but succesfull on other chromosomes HOT 3
- Can VG simulate the third-generations long reads? HOT 5
- Issue with vg map and vg augment for certain inputs. HOT 2
- Merging multiple graph files HOT 4
- short read giraffe alignment crashes most of the time, works on a few random samples - Signal 11 HOT 2
- Running VG deconstruct failed in the gfa generated from PGGB pipline HOT 3
- ERROR vg autoindex :Tag "transcript_id" not found in attributes (line 145). ERROR: Tag "transcript_id" not found in attributes (line 4). ERROR: No transcripts parsed (remember to set feature type "-y" in vg rna or "-f" in vg autoindex) HOT 1
- Error Exceeded Limit of Size on Disk While Running vg index HOT 1
- Mapping paired reads w/ giraffe, no EOF marker, job stalls, exit code 79 HOT 5
- Construct a generation-level pan-genome HOT 5
- Release vg v1.58.0
- VG autoindex not working with PGGB GFA HOT 3
- vg augment forwardize_breakpoints error HOT 1
- How to quantify the uncore gene expression by using vg rna HOT 1
- vg pack signal 6 error HOT 3
- Remove limit on Dozeu problem cell count from old Giraffe codepath
- Giraffe can crash when multi-mapping paired-end reads without a fragment lenght distribution
- About vg call -a -A HOT 1
- error:[vg::Constructor] Variant/reference sequence mismatch HOT 1
- Fix misplaced indel edits HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from vg.