Comments (2)
I get the same error.
To go around it I tried to downgrade gcc with a conda environment:
conda create -n gcc gcc=11 zlib libzlib ncurses
but not luck, I get the following error even though zlib and ncurses are installed:
gcc -g -Wall -O2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target
.o phase.o bam2depth.o -Lbcftools libbam.a -lbcf -lcurses -lm -lz
/home/user/software/conda/envs/gcc/bin/../lib/gcc/x86_64-conda-linux-gnu/11.4.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -lcurses: No such file or directory
/home/user/software/conda/envs/gcc/bin/../lib/gcc/x86_64-conda-linux-gnu/11.4.0/../../../../x86_64-conda-linux-gnu/bin/ld: cannot find -lz: No such file or directory
collect2: error: ld returned 1 exit status
make[1]: *** [Makefile:44: samtools] Error 1
make[1]: Leaving directory '/home/user/software/tmp/crisp/samtools'
make: *** [Makefile:10: all] Error 2
I'm a bit stuck now..
from crisp.
I have also encountered the same problem, I would like to ask if anyone has solved this problem
from crisp.
Related Issues (20)
- What parameters should be used for unknown number of samples in a pool? HOT 5
- Missing Data HOT 3
- Allele Balance HOT 7
- Depth fields HOT 1
- Segfault and wrong chromosome offset while using --region argument HOT 3
- what is ADb(ADf ADr) tag?
- CRISP.binary: corrupted double-linked list HOT 6
- Segmentation fault for a specific chromosome HOT 2
- Installation Error HOT 3
- .vcf contains extra tab HOT 3
- convert_pooled_VCF
- Poolsize = 1 HOT 1
- Installation error. does not seem to compile right HOT 1
- CRISP calling variants outside of the specified bed file HOT 3
- Issues with --bed option HOT 1
- installation problems
- VCF format showing as version 4.0
- Feature request: AD field in VCF output
- Is it possible to use CRISP to working with low coverage WGS data? HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from crisp.