Comments (3)
needs a decision on class structure
from msstatsconvert.
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num proteins
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num features
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missingness
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???
from msstatsconvert.
-> make MSstatsDataDiagnostic function in MSstats
from msstatsconvert.
Related Issues (20)
- Shared peptides support HOT 1
- Make sure that duplicated biorep IDs are found in annotation
- Re-write model-fitting functions HOT 1
- Function for conversion from wide format to long format
- as.data.frame method for MSstatsValidated class
- Output formats changed: PD, PDTMT, Spectronaut
- MaxQuant, PD TMT output: handle ratios of intensities HOT 1
- Handle Time column in annotation
- Remove underscores from PeptideSequence and maybe Condition
- SpectroMine: PG.QValue nad PG.Qvalue - allow both versions
- diaNN converter HOT 6
- Merging annotation: check if nrow(input) > 0
- diann converter looking for fragmentinfo and precursormz HOT 1
- clean_DIANN.R results in empty DF, if no ";" is detected in ProteinName HOT 5
- DIANN and data process HOT 6
- Can not combine annotation.csv HOT 2
- Reporting PDtoMSstatsTMTFormat error with PTM data HOT 2
- DIANN converter: Cannot detect PeptideModifiedSequence in input columns HOT 14
- Proteome Discoverer V3.1, removal of Spectrum File column HOT 1
- Create PEAKs Studio Converter
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from msstatsconvert.