Comments (4)
Polyalineli
commented on June 21, 2024
For me changing 255 to 254 in substr(aggregates$gene_id,1,255) line of DEXSeqDataSetFromFeatureCounts() solved the issue. Because in my case featurecounts cropped aggregate geneIDs of massively overlapped exons to 254 characters.
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LorenzoLF
commented on June 21, 2024
Same problem for me. Unfortunately changing 255 to 254 in substr(aggregates$gene_id,1,255) does not seem to fix it either. Has somebody found another fix? Thank you.
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hangnoh
commented on June 21, 2024
In my case, there was an aggregated gene ID that was strangely long. I removed it from both dcounts and aggregates, then everything worked.
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wilburnguo
commented on June 21, 2024
m
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Related Issues (11)
- featureCounts parameters HOT 3
- Something wrong with featureCounts HOT 1
- GTF to GFF transformation HOT 6
- FeatureCount parameters HOT 1
- Error in source("load_SubreadOutput.R")
- long names of gene sets in the flattened gtf stop the R script HOT 2
- "-t" argument, exonic_part HOT 3
- geneID/featureID truncated HOT 2
- Subread_to_DEXseq problem HOT 8
- Error in DEXSeqDataSetFromFeatureCounts HOT 5
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