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adegenet

adegenet: a R package for the multivariate analysis of genetic markers

aldex2

aldex_bioc

ALDEx_bioc is the working directory for updating bioconductor

amplispike

Analysis of amplicon sequencing data with synthetic spike-in standards

anova

Shiny application to conduct heteroscedasticity consistent ANOVA (in Russian)

atlas

ATLAS - Three commands to start analysing your metagenome data

autorestic

Config driven, easy backup cli for restic.

balifam

Protein multiple sequence alignment benchmark

batchblaster

Nextflow-based BLAST pipeline

bayesian-basics

:no_entry_sign: :leftwards_arrow_with_hook: A document that introduces Bayesian data analysis.

bioconda-recipes

Conda recipes for the bioconda channel.

biodiverse

A tool for the spatial analysis of diversity

biodiverse-docker

Docker and Singularity images to run Biodiverse software

brms

brms R package for Bayesian generalized non-linear multilevel models using Stan

checkdigit

R package to calculate and verify check digits

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

dadaist2

🎨 dadaist2 - Highway to R

dadasnake

Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake

distwiz

distwiz - Sparse to full matrix converter

dotfiles

fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

ggord

a take on ordination plots using ggplot2

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

ghost-tree

goclust

Clustering tool for sparse matrices produced by USEARCH

gsmc-fungi.github.io

The Global Soil Mycobiome consortium dataset

itsxpress

Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

juliadatascience

Book on Julia for Data Science

kiaglm

Shiny application to check GLM robustness to influential observations

metagmisc

Miscellaneous functions for metagenomic analysis.