vmixao Goto Github PK
Name: Verónica Mixão
Type: User
Bio: Bioinformatician. Interested on the analysis of clinical and environmental data for the study of pathogenic agents.
Twitter: VeronicaMixao
Verónica Mixão's Projects
arangs2016
Automated and Reproducible Analysis of Next Generation Sequencing data (ARANGS16)
detect_recombination
grapetree
GrapeTree is a fully interactive, tree visualization program, which supports facile manipulations of both tree layout and metadata. Click the first link to launch: https://achtman-lab.github.io/GrapeTree/MSTree_holder.html
haplotypo
This is the Haplotypo repository
haplotypo_docker
mutation_profile
Identify the sequence context flanking SNPs of interest and screen for potential profiles/signatures of interest
orion_handbook
Results from ORION NGS will be documented here using ReadTheDocs
reportree
A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data
scripts
This repository contains scripts for daily use which are not associated to any program or pipeline.
treecluster
Efficient phylogenetic clustering of viral sequences
vcf2mst
Hamming Distance based Minimum Spanning Tree from Samples vcf using graptree
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