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biofilms

Files accompanying Moser, et al. (2019) Biofilm paper

biohsi

comprehensive_genetic_circuit_analysis

Files accompanying Espah Borujeni, et al. (2020)

constr-peptide-paper-figs

Code used to generate plots in "Selection for constrained peptides that bind to a single target protein" Andrew M. King, et al.

dna_sentinels

Files accompanying Nou et al. (2023)

dnaplotlib

DNA plotting library for Python

ecn_analysis

Files accompanying Triassi, et al. (2023)

linalool_pathway_simulation

Files accompanying JH Park et. al. 2022

mit-broadfoundry

Tools developed as part of the MIT-Broad Foundry for Synthetic Biology

plant-microbe-communication

Files accompanying Boo and Toth et al. (2023)

predict-lab-origin

Software for article "Deep learning to predict the lab-of-origin of engineered DNA"

promoter-library-design-tool

Relevant files for Moser, et al (2018). Dynamic control of endogenous metabolism with combinatorial logic circuits.

promoter_activity_quantification

Files accompanying Shao, et al. (2020)

ripp-analysis

Code and notebooks for analysis of LC-MS data of RiPP modification

ripp-design

Jupyter notebooks and associated data for designing enzyme-modified peptides