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16s_ngs_data_analysis

billboarder

:bar_chart: Htmlwidget for billboard.js

c-score_analysis

co-occurrence

R scripts for performing co-occurrence analyses

co-occurrence_network_analysis

R and python scripts for correlation-based network analysis

cooccur

Probabilistic Species Co-occurrence Analysis in R

d3heatmap

A D3.js-based heatmap htmlwidget for R

edwards-et-al.-2014

frontiers_2017_greatlakesplasticdistrib

This repository contains the .rmd file and data files used in "Distribution and modeled transport of plastic pollution in the Great Lakes, the world’s largest freshwater resource"

gephi

Gephi - The Open Graph Viz Platform

ggtable

Simple frequencies and tabulations as bar plots.

global-bacterial-diversity-in-wwtps

metagenomics

Scripts for metagenomics and next generation sequencing data analysis

microbiome

microbiome_network

Automatic generation of colored networks, stacked bar plots, and zc-plots based on input parameters

niche-breadth-range-size

This repository contains code and data for analysing niche breadth-range size relationships and simulating climates using Gaussian Random Fields, using INLA in R

nmds_analysis

non-metric multidimensional scaling, or NMDS analysis in R

note

nwt_movinguphill2

Analysis of Niwot 2015 18S, 16S, ITS data

otu-table-to-bubble-plot

R script to create from OTU/ASV tables nice bubble plots for your scientific publications

pheatmap

Pretty heatmaps

rda_analysis

RDA_analysis