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2018-ncbi-lineages

Extract lineage CSVs from NCBI for use with sourmash lca.

adam

ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-crispr

List of software/websites/databases/other stuff for genome engineering

awesome-for-beginners

A list of awesome beginners-friendly projects.

awesome-shell

A curated list of awesome command-line frameworks, toolkits, guides and gizmos. Inspired by awesome-php.

awesome-vscode

🎨 A curated list of delightful VS Code packages and resources.

basta

Basic Sequence Taxonomy Annotator

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

:microscope: Path to a free self-taught education in Bioinformatics!

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

computationalgenomicsmanual

Robs manual for the computational genomics and bioinformatics class.

coronavirus

The coronavirus dataset

deep_learning_examples

Examples of using deep learning in Bioinformatics

dot-files

Backup of my dotfiles.

drake

An R-focused pipeline toolkit for reproducibility and high-performance computing

education.rstudio.com

flutype-task

flutype_task

fmap

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

homesetup

Your shell good as hell ! Not just dotfiles.

lime

Lime: Explaining the predictions of any machine learning classifier

metagenome

modiscript

Acche din aa gaye

numpy

Jupyter Notebook & Data Associated with my Tutorial video on the Python NumPy Library

opsdroid

🤖 An open source chat-ops bot framework

packrat

Packrat is a dependency management system for R

pavian

Interactive analysis of metagenomics data

phylodb

Reference database suitable for comprehensive annotation of metagenomic and metatranscriptomic data.