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bayesian-nested-patch-occupancy-model

Model code in R for Bayesian nested patch occupancy model. Originally created for PIT tag salmonids, to estimate escapement to sections of a river network.

bruv_data-collection

shiny app to collect BRUV footage data from volunteer viewers

florida-goliath-grouper-trends

Estimating population trajectories for Goliath Grouper in the coastal waters of Florida (Florida Keys & Dry Tortugas, Atlantic coast, and Gulf of Mexico) using Bayesian hierarchical state-space models and roving diver citizen science data.

germ

Growth Estimation with (some) Rings Missing (GERM) - Bayesian like model for imputing the number of missing rings when vascularization may obscure some rings in the center. Developed for Spine data.

integratedstatespace_tagvideodata

R code for integrated state space model for population growth based on a mark-resight study and counts from video pans for the Nassau Grouper. Used for PNAS publication (in press). By L. Waterhouse and B. X. Semmens

intro-data-viz-winter-2017

Introduction to Data Visualization and Data Wrangling in R

milo

Practice to learn github information about Milo the wonderhorse and other neat-O pets.

ninja

All about Ninja the Cat

reef_florida_keys

reef_rvc_index_comparison

Study comparing population trajectories from opportunistic REEF citizen science data with structured survey data from RVC surveys in Key Largo and Key West.

statsclass_public

Intro to R for fisheries / marine ecology