Comments (5)
wdecoster
commented on August 18, 2024
I agree that shouldn't be possible. Which aligner was used, and which version? Cramino uses the de tag from minimap2, if available.
from cramino.
danrdanny
commented on August 18, 2024
Minimap2, 2.17-r941.
from cramino.
wdecoster
commented on August 18, 2024
Most likely a known bug then: https://github.com/lh3/minimap2/releases/tag/v2.18
from cramino.
danrdanny
commented on August 18, 2024
Ah, good catch. I'm super excited to re-align my data with a new version. :)
from cramino.
wdecoster
commented on August 18, 2024
Since I was also using v2.17 alignments I dismissed similar results I saw in my tests, but there was something more going on which is now solved by using f64s rather than f32s for the read identity. Version 0.9.4 has this fix, and I'll make a new release soon.
from cramino.
Related Issues (20)
- Support older glibc HOT 1
- More dynamically handle number of bins for read length histogram HOT 1
- Optionally output as json HOT 1
- Identities and splicing
- --spliced not supported? (Question) HOT 3
- thread 'main' panicked at 'Unexpected type of Aux I32(8) error HOT 8
- Does cramino support unmapped bam? HOT 2
- Dorado BAM output and stats HOT 6
- Write out histogram bin counts rather than length HOT 2
- thread 'main' panicked at 'index out of bounds: when running with `--karyotype`
- Not including chromosome with `_` in the name HOT 4
- Feature: Compute & export data for bivariate plots HOT 3
- thread 'main' panicked at 'Unexpected type of Aux for phaseset HOT 11
- Option to exclude contigs in the reference HOT 1
- Report aligned bases HOT 2
- Multiple file inputs HOT 3
- Help understanding Normalized read count per chromosome across techinical replicates HOT 4
- Should --ubam really include secondary alignments? HOT 3
- Reads length within specific regions HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from cramino.