Comments (5)
I agree that shouldn't be possible. Which aligner was used, and which version? Cramino uses the de
tag from minimap2, if available.
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Minimap2, 2.17-r941.
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Most likely a known bug then: https://github.com/lh3/minimap2/releases/tag/v2.18
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Ah, good catch. I'm super excited to re-align my data with a new version. :)
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Since I was also using v2.17 alignments I dismissed similar results I saw in my tests, but there was something more going on which is now solved by using f64s rather than f32s for the read identity. Version 0.9.4 has this fix, and I'll make a new release soon.
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Related Issues (20)
- Support older glibc HOT 1
- More dynamically handle number of bins for read length histogram HOT 1
- Optionally output as json HOT 1
- Identities and splicing
- --spliced not supported? (Question) HOT 3
- thread 'main' panicked at 'Unexpected type of Aux I32(8) error HOT 8
- Does cramino support unmapped bam? HOT 2
- Dorado BAM output and stats HOT 6
- Write out histogram bin counts rather than length HOT 2
- thread 'main' panicked at 'index out of bounds: when running with `--karyotype`
- Not including chromosome with `_` in the name HOT 4
- Feature: Compute & export data for bivariate plots HOT 3
- thread 'main' panicked at 'Unexpected type of Aux for phaseset HOT 11
- Option to exclude contigs in the reference HOT 1
- Report aligned bases HOT 2
- Multiple file inputs HOT 3
- Help understanding Normalized read count per chromosome across techinical replicates HOT 4
- Should --ubam really include secondary alignments? HOT 3
- Reads length within specific regions HOT 3
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